Top e-Invoicing Software in Malaysia

In 2026, e-invoicing in Malaysia is no longer something businesses can treat as a future project. It has become an active compliance and operations priority. As implementation continues in phases, businesses now need software that does more than create invoices. They need a platform that can help them generate compliant e-invoices, manage records properly, reduce manual work, and keep billing connected with accounting and day-to-day business workflows.

This is why choosing the right e-invoicing software matters. The best e-invoicing software in Malaysia should not only support LHDN compliance, but also help businesses handle invoicing, accounting, client management, reporting, and automation from one system.

Software	Starting Price	Trial Period	Free version
Refrens	RM180/year	✔️	✔️
SQL	RM474/year	❌	❌
Financio	RM495/year	✔️	❌
AutoCount	RM2200/year	✔️	❌
Biztory	RM390/year	✔️	❌
Bukku	RM590/year	✔️	✔️
HashMicro	Custom	–	–
QNE	Custom	✔️	❌

Table of Contents

1. Refrens E-invoicing Software

Trusted by more than 500,000 businesses across 178+ countries, Refrens is a cloud-based e-invoicing software built for modern businesses that want to stay compliant while keeping invoicing, accounting, and operations connected in one place.

In 2026, businesses in Malaysia need more than a basic invoice maker. They need software that helps them generate LHDN-compliant e-invoices, manage invoice records properly, reduce manual entry, and handle billing with better speed and accuracy. Refrens is built for this shift. It helps businesses create and manage e-invoices while also supporting accounting, payment tracking, reports, inventory, and team workflows from a single platform.

Key Features:

LHDN-Compliant E-Invoicing: Generate fully compliant e-invoices as per Malaysia’s MyInvois framework, with correct tax fields, validations, and formats built in.
QR Code & Validation Ready: Every e-invoice includes an auto-generated QR code for instant verification by customers and authorities, improving transparency and compliance.
Create E-Invoices in Seconds: Quickly generate invoices, credit notes, debit notes, and other documents with minimal manual input and ready-to-use templates.
Automatic Bookkeeping Integration: Every invoice automatically updates journal entries, ledgers, and vouchers—keeping your accounting aligned without manual work.
Smart Automation & Data Validation: Automate up to 80% of repetitive data entry while built-in validations reduce errors and ensure compliance with LHDN guidelines.
Real-Time Reports & Dashboards: Get instant access to balance sheets, P&L, receivables, payables, SST reports, and business insights from a central dashboard.
Invoice & Payment Tracking: Track invoice status, customer dues, and payment activity in real time with clear visibility across your business.
Inventory & Workflow Integration: Automatically update stock and business workflows when invoices are created, ensuring operations stay connected.
Multi-User Access & Role-Based Control: Add your team and accountant with permission-based access to maintain security and control over financial data.
Cloud-Based Access: Manage invoicing, accounting, and reports from anywhere with real-time syncing across devices and users.
All-in-One Business Platform: Combine e-invoicing, accounting, inventory, expenses, and reporting in one system instead of managing multiple tools.

Additional Features:

Refrens enhances productivity by integrating with platforms like WhatsApp, Shopify, and Facebook. Its AI assistant, Freya, provides instant business insights, helps with invoice management, and streamlines decision-making. It also features an integrated sales CRM for managing leads and pipelines, automates expense tracking, and provides detailed financial reporting. With its user-friendly platform, cloud access, and dedicated customer support, Refrens is ideal for businesses looking to simplify invoicing, sales operations, and overall business management.

Pricing:

Basic: Free
Books Essential: RM180/year
Books Pro: RM360/year

User Reviews:

2. SQL

SQL Account is a leading e-invoicing software in Malaysia, trusted by over 270,000 businesses. It ensures compliance with the Malaysian Inland Revenue Board’s (LHDN) e-invoicing regulations. Designed to simplify complex workflows, it supports individual and bulk invoice submissions. SQL Account integrates seamlessly across cloud, on-premise, and mobile platforms, offering unparalleled flexibility.

Key Features

Supplier Invoice Integration: Import supplier e-invoices directly into the system, eliminating manual entry. This ensures accurate records and streamlined operations.
Consolidated E-Invoicing: Supports monthly consolidated invoicing, ideal for businesses managing bulk transactions. Simplifies compliance with minimal effort.
Intelligent Reporting: Offer actionable insights with features like commission reports, top customer analysis, and annual profit comparisons. Tailor real-time data to make informed, strategic decisions for business growth.
Cancellation Management: Cancel e-invoices within 72 hours of submission with SQL’s countdown feature, maintaining inventory accuracy and compliance.
Self-Billed E-Invoicing: Create self-billed invoices for supplier transactions, integrating them directly into your inventory management system.
TIN Validation for Purchases: Validate Tax Identification Numbers (TIN) during purchase invoice creation, ensuring error-free inventory updates and compliance.
Cloud-Based Inventory Tracking: Access inventory data from anywhere via SQL’s cloud integration. Ideal for businesses managing multiple locations or remote operations.

Additional Features

SQL Account ensures compliance with the 55 mandatory and optional fields required by LHDN. It supports bulk submission and cross-border transaction e-invoicing. The software also includes Real-time inventory Updates, seamless integration with financial workflows, and a mobile-friendly interface.

Pricing

Essential: RM474/year
Pro: RM654/year

User Reviews:

3. QNE

QNE E-Invoice Solution is a robust tool for Malaysian businesses, designed to meet the LHDN e-invoicing requirements. It enables effortless invoice submission and validation with just a few clicks. The platform supports standard, consolidated, and self-billed e-invoices, ensuring flexibility for different business needs. Integrated with QNE AI Cloud and Hybrid Cloud Accounting, it offers automated compliance and enhanced operational efficiency.

Key Features

LHDN-Compliant E-Invoices: Automates e-invoice creation following Malaysia’s LHDN standards for accurate and compliant transactions.
Integrated Middleware: QNE E-Integrator ensures smooth integration with third-party systems for hassle-free e-invoice processing.
Real-Time Invoice Tracking: Monitor invoice status and updates instantly, reducing errors and improving payment cycles.
Customizable Invoice Templates: Allows users to personalize invoices to align with business branding and professional standards.
Multi-Currency Support: Facilitates e-invoicing for international clients with automatic currency conversions.
Secure Data Handling: Advanced encryption ensures that sensitive transaction data is securely processed and stored.
Comprehensive Reporting Tools: Generate detailed reports to analyze e-invoice performance and streamline financial management.

Additional Features

QNE Software supports hybrid cloud accounting, payroll, and HR solutions for enhanced business productivity. It also offers mobile accessibility via the QNE WeChat App, enabling users to manage invoices on the go. With integrated e-commerce and digital portals, it provides a holistic approach to managing business operations.

Pricing

Custom pricing based on your business requirements.

User Reviews:

4. Financio

Financio E-Invoicing Solution is a fully compliant platform designed to seamlessly adopt LHDN e-invoicing regulations in Malaysia. It offers fast invoice creation, tracking, and validation to enhance efficiency. With almost real-time validation, businesses can ensure error-free invoicing. Financio integrates smoothly with ERP systems and supports multi-currency transactions.

Key Features:

100% LHDN Compliance: Ensures all e-invoices meet Malaysia’s Inland Revenue Board (LHDN) regulations, reducing risks of non-compliance.
Real-Time Validation: Verifies invoices instantly, minimizing errors before submission to enhance operational accuracy.
Invoice Tracking: Allows users to monitor invoice statuses, including submission, validation, rejection, or cancellation, all within the software.
Seamless Reporting: Generates compliant reports for B2B, B2C, and B2G transactions, aiding in tax submissions and audits.
Interoperability: Fully compatible with other accounting software and ERP systems for smooth data exchange with partners.
Recurring Billing: Automates periodic billing processes, saving time and reducing manual intervention.
Multi-Currency Support: Handles international transactions by automatically converting currencies, ensuring smooth global operations.

Additional Features

Financio incorporates AI-powered OCR scanning to streamline receipt management, reducing manual effort. Its robust customer support includes live chat and technical guidance, ensuring users can maximize the software’s potential. Regular updates keep businesses compliant with the latest e-invoicing regulations.

Pricing

Accounting Essentials: RM495/year
Accounting Premier: RM825/year

User Reviews:

5. HashMicro

HashMicro E-Invoicing Software is an IRBM (LHDN) compliant platform integrated with MyInvois, tailored for seamless e-invoicing processes. It simplifies invoice creation, approval, and reporting while ensuring compliance with Malaysian Ministry of Finance regulations. Businesses can benefit from personalized templates, tax calculation features, and online payment options. HashMicro supports efficient workflows for businesses of all sizes.

Key Features

Automated E-Invoice Creation: Generate IRBM-compliant e-invoices with ease using customizable templates, reducing manual effort.
Tax-Compliant E-Invoicing: Ensure e-invoices are aligned with Malaysian tax laws, including GST/VAT calculations for regulatory compliance.
Real-Time Invoice Submission: Submit invoices instantly through integrated systems, ensuring timely delivery to clients and tax authorities.
Digital Validation of E-Invoices: Validate invoice accuracy with built-in checks, minimizing errors before submission.
Online Payment Integration: Link e-invoices with payment gateways, enabling clients to settle invoices securely online.
Comprehensive Reporting: Access real-time analytics on e-invoice statuses, overdue payments, and overall financial performance.
QR Code-Enabled Verification: Include QR codes on e-invoices for quick validation and enhanced transparency during transactions.

Additional Features

The software integrates with CRMs, accounting systems, and procurement tools for end-to-end operational efficiency. It also supports credit limit management and automated receipt generation, further enhancing the invoicing experience.

Pricing

Custom pricing based on your business requirements.

6. AutoCount

AutoCount E-Invoice Solution simplifies e-invoicing for Malaysian businesses by ensuring compliance with LHDN MyInvois regulations. The platform supports XML and JSON formats for seamless submission. It enables businesses to automate invoice generation, manage validations, and streamline high-volume transactions. With built-in integration capabilities, it bridges the gap between SMEs and LHDN requirements.

Key Features

Automated Invoice Submission: Generate and submit standard, consolidated, and self-billed e-invoices directly to the LHDN MyInvois system without manual intervention.
XML and JSON Compliance: Create e-invoices in LHDN-approved XML and JSON formats, ensuring accurate data transmission and validation.
Standardized Invoice Processing: Process standard e-invoices from AutoCount Accounting or Cloud Accounting with an efficient upload to the AutoCount E-Invoice Platform (AIP).
Consolidated E-Invoices for Retail: Consolidated invoices from multiple outlets and generated compliant e-invoices for B2C transactions directly through the POS system.
Self-Billed E-Invoices: Automate self-billed invoice creation by transferring details from purchase invoices and payment vouchers, saving time in high-volume scenarios.
Real-Time Validation and Queuing: Handle LHDN system downtimes effectively with a queuing mechanism that resubmits invoices until validated.
QR Code Integration: Simplify customer interactions by enabling them to scan QR codes on receipts to request e-invoices, streamlining the submission process.

Additional Features

AutoCount E-Invoice Solution integrates seamlessly with other AutoCount modules like accounting, POS, and HRMS for unified operations. It supports onboarding features for updating customer and supplier details, ensuring data accuracy. The system is also designed to accommodate Peppol standard invoicing in the future for broader interoperability.

Pricing

Account Plus Edition: RM2200
Express Plus Edition: RM2800
Basic Edition: RM4200
Pro Edition: RM6000
Premium Edition: RM9000

7. Biztory

Biztory Cloud Accounting simplifies e-invoicing with automation and a user-friendly platform. The system manages invoice submission, validation, and supplier bills with minimal manual effort. It supports self-billed invoicing and bulk invoice consolidation, saving time and improving accuracy. Real-time notifications ensure you stay compliant with LHDN regulations effortlessly.

Key Features

Automated e-Invoice Submission and Validation: Biztory automates the process of submitting and validating invoices, ensuring that all submissions comply with regulations. This reduces human errors and speeds up the entire invoicing process.
Send, Cancel, and Reject Invoices: Manage all your invoices in one place. Biztory allows you to send, cancel, or reject invoices with a single click, simplifying invoice management and improving operational efficiency.
Self-Billed Invoices Support: Biztory simplifies self-billed invoicing for freelancers or contractors. It automatically generates and submits self-billed invoices, ensuring compliance and accuracy with minimal effort.
Bulk Invoice Management: Easily consolidate multiple invoices and submit them in bulk, saving you from manually entering each receipt. This feature enhances productivity by handling large volumes of invoices quickly.
Digitizing Quotations and Invoices: Biztory allows you to digitize your quotations and invoices, making it easier to send and manage them. This feature helps businesses save time and focus on growing sales rather than dealing with administrative tasks.
Cash Flow Monitoring: Biztory tracks transaction histories and forecasts financial metrics, helping businesses manage their cash flow and plan for better financial outcomes. This feature supports strategic decision-making and financial planning.

Additional Features

Biztory also offers an advanced inventory system to manage multiple stock levels and UOM types, along with an automated accounting report generation feature for essential financial reports. Its platform also facilitates easy access to financial metrics on the go, optimizing the billing process and enhancing business operations.

Pricing

Basic: RM390/year
Growth: RM1,290/year
Pro: RM2,490/year
Elite: Custom Pricing

8. Bukku

Bukku provides an efficient e-invoicing solution that ensures compliance with Malaysia’s LHDN MyInvois system. It integrates seamlessly with the Peppol network, allowing businesses to send and receive e-invoices easily. Bukku streamlines the invoicing process, offering a range of features like bulk submission and self-billed invoices. Its user-friendly interface allows users to stay compliant while reducing manual invoicing tasks. With automated updates to business profiles, Bukku helps businesses meet LHDN requirements with minimal effort.

Key Features:

LHDN E-Invoice Compliance: Bukku ensures full compliance with LHDN’s e-invoice submission requirements, helping businesses update their profiles and data seamlessly for submission to MyInvois.
Peppol Integration: Bukku integrates with the Peppol network, allowing businesses to send and receive e-invoices with other Peppol-connected software, enhancing international invoicing capabilities.
MyInvois Ready Company Profile: The software helps businesses prepare their company profile for MyInvois submission, indicating which information is complete or missing for quick updates.
Standard E-Invoice Submission: Bukku allows businesses to submit individual or bulk invoices directly to MyInvois with just one click, providing easy tracking and notifications of submission status.
Consolidated E-Invoice Submission: For certain business types, Bukku supports consolidated e-invoice submissions, enabling businesses to submit multiple invoices as one, streamlining the process.
Self-Billed E-Invoice Submission: When suppliers cannot provide e-invoices, Bukku enables businesses to create and submit self-billed invoices, ensuring compliance even with manual bill entries.
E-Invoice Cancellation: Bukku allows businesses to cancel e-invoices within 72 hours of submission to MyInvois, ensuring that any mistakes are corrected quickly and efficiently.

Additional Features

Bukku also offers free, permanent e-invoice submission for MyInvois, along with included live chat support and automatic upgrades. The software’s simple user interface and affordable pricing make it accessible to businesses of all sizes.

Pricing:

Launch: RM 0.00/year
Growth: RM 590.00/year
Premium: RM 990.00/year

User Reviews:

When choosing e-invoicing software for your Malaysian business, consider the following factors:

LHDN Compliance: Ensure the software adheres to LHDN regulations and integrates with MyInvois for seamless submissions.
Integration: Ensure compatibility with existing systems like accounting, CRM, ERP, and inventory management tools.
PEPPOL Network Support: Opt for platforms that facilitate cross-border invoicing through the PEPPOL network.
Automation: Look for features like automated invoice generation, validation, and bulk processing.
Real-Time Tracking: Select software with real-time monitoring of invoice statuses and payment updates.
User-Friendly Interface: An intuitive design reduces the learning curve and encourages adoption.
Data Security: Robust encryption and compliance with data protection laws are essential.
Cost: Ensure the pricing structure aligns with your budget, with no hidden fees.
Support: Look for reliable customer support and training resources.

Conclusion

The transition to e-invoicing in Malaysia is an opportunity for businesses to streamline operations, enhance accuracy, and stay ahead in a digitally transforming landscape. Each software featured here offers unique benefits tailored to various business needs, ensuring compliance with LHDN regulations while optimizing workflows.

By selecting the right e-invoicing software, you not only meet regulatory requirements but also improve efficiency and scalability for future growth. Take the next step in your business journey with confidence—choose an e-invoicing solution that drives success and simplifies compliance.